# Publications Search Within Results Search Within Results search ## 46 results Show filters filter\_alt Sort by Year of PublicationAlphabetical A-Z sort ## 46 results Download 46 citations download- [BibTeX](/node/1543546/export?format=bibtex) - [EndNote X3 XML](/node/1543546/export?format=endnote8) - [EndNote 7 XML](/node/1543546/export?format=endnote7) - [Endnote tagged](/node/1543546/export?format=tagged) - [Marc](/node/1543546/export?format=marc) - [PubMedId](/node/1543546/export?format=pubmed_id) - [RIS](/node/1543546/export?format=ris) ### 2025 Moon S, Liang J, Lee HJ, Maalouf A, Yu Z, Moza S, Zhang Y, Lu H. [Network modularity reveals context and state-dependent reorganization of time-varying functional connectivity in single-cell resolved neural activity recordings](/publication/network-modularity-reveals-context-and-state-dependent-reorganization-time-varying). 2025. Moon S, Liang J, Lee HJ, Maalouf A, Yu Z, Moza S, Zhang Y, Lu H. [Network modularity reveals context and state-dependent reorganization of time-varying functional connectivity in single-cell resolved neural activity recordings](/publication/network-modularity-reveals-context-and-state-dependent-reorganization-time-varying). 2025. - add\_circle\_outline do\_not\_disturb\_on Abstract - [ descriptionFull Version](https://pubmed.ncbi.nlm.nih.gov/41279297/) An important goal of neuroscience is to understand how biological neural networks organize activity at multiple scales to enable complex information processing and behavioral output. To address this challenge, large-scale neural activity datasets with... - [ descriptionFull Version](https://pubmed.ncbi.nlm.nih.gov/41279297/) Moza S, Zhang Y. [CeDNe: A multi-scale computational framework for modeling structure-function relationships in the C. elegans nervous system](/publication/cedne-multi-scale-computational-framework-modeling-structure-function-relationships-c). 2025. Moza S, Zhang Y. [CeDNe: A multi-scale computational framework for modeling structure-function relationships in the C. elegans nervous system](/publication/cedne-multi-scale-computational-framework-modeling-structure-function-relationships-c). 2025. - add\_circle\_outline do\_not\_disturb\_on Abstract - [ descriptionFull Version](https://www.biorxiv.org/content/10.1101/2025.11.03.683805v1) Understanding how neural circuits generate behavior requires integrating structural and functional data across scales. *C. elegans* with its complete connectome, genetically identifiable neurons, single-cell transcriptome, neuropeptide-receptor distribution... - [ descriptionFull Version](https://www.biorxiv.org/content/10.1101/2025.11.03.683805v1) Liang J, Moon S, Moza S, Lee HJ, Eleftheriadis PE, Chen J, Ge M, Chen M, Lu H, Zhang Y. [Aversive Learning Induces Context-Gated Global Reorganization of Neural Dynamics in Caenorhabditis elegans](/publication/aversive-learning-induces-context-gated-global-reorganization-neural-dynamics). 2025. Liang J, Moon S, Moza S, Lee HJ, Eleftheriadis PE, Chen J, Ge M, Chen M, Lu H, Zhang Y. [Aversive Learning Induces Context-Gated Global Reorganization of Neural Dynamics in Caenorhabditis elegans](/publication/aversive-learning-induces-context-gated-global-reorganization-neural-dynamics). 2025. - add\_circle\_outline do\_not\_disturb\_on Abstract - [ descriptionFull Version](https://pubmed.ncbi.nlm.nih.gov/41279187/) Learning generates experience-dependent changes to the brain. However, how neurons of diverse functions and connectivity reorganize and modulate their activities to generate coherent changes while preserving essential functions is not well understood... - [ descriptionFull Version](https://pubmed.ncbi.nlm.nih.gov/41279187/) ### 2023 Wu T, Ge M, Wu M, Duan F, Liang J, Chen M, Gracida X, Liu H, Yang W, Dar A, et al. [Pathogenic bacteria modulate pheromone response to promote mating](/https%3A//rdcu.be/c2LOs). #, co-first authors. Nature. 2023;613:324–331. Wu T, Ge M, Wu M, Duan F, Liang J, Chen M, Gracida X, Liu H, Yang W, Dar A, et al. [Pathogenic bacteria modulate pheromone response to promote mating](/https%3A//rdcu.be/c2LOs). #, co-first authors. Nature. 2023;613:324–331. - add\_circle\_outline do\_not\_disturb\_on Abstract - [ descriptionPublisher's Version](https://pubmed.ncbi.nlm.nih.gov/36599989/) Pathogens generate ubiquitous selective pressures and host–pathogen interactions alter social behaviours in many animals1–4. However, very little is known about the neuronal mechanisms underlying pathogen-induced changes in social behaviour. Here we show... - [ descriptionPublisher's Version](https://pubmed.ncbi.nlm.nih.gov/36599989/) Lee H, Liang J, Chaudhary S, Moon S, Yu Z, Wu T, Liu H, Choi M-K, Zhang Y, Lu H. [Automated cell annotation in multi-cell images using an improved CRF\_ID algorithm](/publications/automated-cell-annotation-multi-cell-images-using-improved-crfid-algorithm). #co-first author; ^co-corresponding author; eLife https://doi.org/10.7554/eLife.89050.1. 2023. Lee H, Liang J, Chaudhary S, Moon S, Yu Z, Wu T, Liu H, Choi M-K, Zhang Y, Lu H. [Automated cell annotation in multi-cell images using an improved CRF\_ID algorithm](/publications/automated-cell-annotation-multi-cell-images-using-improved-crfid-algorithm). #co-first author; ^co-corresponding author; eLife https://doi.org/10.7554/eLife.89050.1. 2023. - add\_circle\_outline do\_not\_disturb\_on Abstract - [ descriptionPublisher's Version](https://doi.org/10.7554/eLife.89050.1) Cell identification is an important yet difficult process in data analysis of biological images. Previously, we developed an automated cell identification method called CRF_ID and demonstrated its high performance in *C. elegans* whole-brain images ([Chaudha](https://elifesciences.org/reviewed-preprints/89050v1#c4)... - [ descriptionPublisher's Version](https://doi.org/10.7554/eLife.89050.1) ### 2022 * Liu, Wu, Canales X, Wu M, Choi M, Duan, Calarco JA, Zhang Y. [Forgetting generates a novel state that is reactivatable](/publications/forgetting-generates-novel-state-reactivatable). #: co-first author. Science Advances. 2022;8(6):eabi9071. * Liu, Wu, Canales X, Wu M, Choi M, Duan, Calarco JA, Zhang Y. [Forgetting generates a novel state that is reactivatable](/publications/forgetting-generates-novel-state-reactivatable). #: co-first author. Science Advances. 2022;8(6):eabi9071. - add\_circle\_outline do\_not\_disturb\_on Abstract - [ descriptionPublisher's Version](https://pubmed.ncbi.nlm.nih.gov/35148188/) Forgetting is defined as a time-dependent decline of a memory. However, it is not clear whether forgetting reverses the learning process to return the brain to the naive state. Here, using the aversive olfactory learning of pathogenic bacteria in C... - [ descriptionPublisher's Version](https://pubmed.ncbi.nlm.nih.gov/35148188/) * Yang, Wu T, Tu, Qin Y, Shen, Li J, Choi M, Duan, Zhang Y. [Redundant neural circuits regulate olfactory integration](/publications/redundant-neural-circuits-regulate-olfactory-integration). PLoS Genetics. 2022;18(1):e1010029. * Yang, Wu T, Tu, Qin Y, Shen, Li J, Choi M, Duan, Zhang Y. [Redundant neural circuits regulate olfactory integration](/publications/redundant-neural-circuits-regulate-olfactory-integration). PLoS Genetics. 2022;18(1):e1010029. - add\_circle\_outline do\_not\_disturb\_on Abstract - [ descriptionPublisher's Version](https://pubmed.ncbi.nlm.nih.gov/35100258/) Olfactory integration is important for survival in a natural habitat. However, how the nervous system processes signals of two odorants present simultaneously to generate a coherent behavioral response is poorly understood. Here, we characterize circuit... - [ descriptionPublisher's Version](https://pubmed.ncbi.nlm.nih.gov/35100258/) ### 2021 * Wasson JA, Harris G, Keppler-Ross S, Brock TJ, Dar AR, Butcher RA, Fischer SE, Kagias K, Clardy J, Zhang Y, et al. [Neuronal control of maternal provisioning in response to social cues](/publications/neuronal-control-maternal-provisioning-response-social-cues). #: co-first author; ^: co-corresponding author. bioRxiv. 2021;10.1101(2021.02.01):429208. * Wasson JA, Harris G, Keppler-Ross S, Brock TJ, Dar AR, Butcher RA, Fischer SE, Kagias K, Clardy J, Zhang Y, et al. [Neuronal control of maternal provisioning in response to social cues](/publications/neuronal-control-maternal-provisioning-response-social-cues). #: co-first author; ^: co-corresponding author. bioRxiv. 2021;10.1101(2021.02.01):429208. - add\_circle\_outline do\_not\_disturb\_on Abstract - [ descriptionPublisher's Version](https://www.biorxiv.org/content/10.1101/2021.02.01.429208v1) Mothers contribute cytoplasmic components to their progeny in a process called maternal provisioning. Provisioning is influenced by the parental environment, but the molecular pathways that transmit environmental cues from mother to progeny are not well... - [ descriptionPublisher's Version](https://www.biorxiv.org/content/10.1101/2021.02.01.429208v1) *Yang W, Wu T, Tu, Choi, Duan, Zhang Y. [Redundant neural circuits regulate olfactory masking](/publications/redundant-neural-circuits-regulate-olfactory-masking). bioRxiv. 2021;2021(04.19):440489. *Yang W, Wu T, Tu, Choi, Duan, Zhang Y. [Redundant neural circuits regulate olfactory masking](/publications/redundant-neural-circuits-regulate-olfactory-masking). bioRxiv. 2021;2021(04.19):440489. - add\_circle\_outline do\_not\_disturb\_on Abstract - [ descriptionPublisher's Version](https://www.biorxiv.org/content/10.1101/2021.04.19.440489v1) Olfactory masking is a complex olfactory response found in humans. However, the mechanisms whereby the presence of one odorant masks the sensory and behavioral responses elicited by another odorant are poorly understood. Here, we report that... - [ descriptionPublisher's Version](https://www.biorxiv.org/content/10.1101/2021.04.19.440489v1) Morud J, Hardege I, Liu H, Wu T, Choi M-K, Basu S, Zhang Y, Schafer W. [Deorphanization of novel biogenic amine-gated ion channels identifies a new serotonin receptor for learning](/publications/deorphanization-novel-biogenic-amine-gated-ion-channels-identifies-new). Current Biology. 2021;2021(07):036. Morud J, Hardege I, Liu H, Wu T, Choi M-K, Basu S, Zhang Y, Schafer W. [Deorphanization of novel biogenic amine-gated ion channels identifies a new serotonin receptor for learning](/publications/deorphanization-novel-biogenic-amine-gated-ion-channels-identifies-new). Current Biology. 2021;2021(07):036. - add\_circle\_outline do\_not\_disturb\_on Abstract - [ descriptionPublisher's Version](https://pubmed.ncbi.nlm.nih.gov/34388373/#affiliation-1) Pentameric ligand-gated ion channels (LGICs) play conserved, critical roles in both excitatory and inhibitory synaptic transmission and can be activated by diverse neurochemical ligands. We have performed a characterization of orphan channels from the... - [ descriptionPublisher's Version](https://pubmed.ncbi.nlm.nih.gov/34388373/#affiliation-1) * Wasson JA, Harris G, Keppler-Ross S, Brock TJ, Dar AR, Butcher RA, Fische SEJ, Kagias K, Clardy J, Zhang Y, et al. [Neuronal control of maternal provisioning in response to social cues](/publications/neuronal-control-maternal-provisioning-response-social-cues-0). ^co-corresponding author; Science Advances. 2021;7(34):8782. * Wasson JA, Harris G, Keppler-Ross S, Brock TJ, Dar AR, Butcher RA, Fische SEJ, Kagias K, Clardy J, Zhang Y, et al. [Neuronal control of maternal provisioning in response to social cues](/publications/neuronal-control-maternal-provisioning-response-social-cues-0). ^co-corresponding author; Science Advances. 2021;7(34):8782. - add\_circle\_outline do\_not\_disturb\_on Abstract - [ descriptionPublisher's Version](https://advances.sciencemag.org/content/7/34/eabf8782) Mothers contribute cytoplasmic components to their progeny in a process called maternal provisioning. Provisioning is influenced by the parental environment, but the molecular pathways that transmit environmental cues between generations are not well... - [ descriptionPublisher's Version](https://advances.sciencemag.org/content/7/34/eabf8782) ### 2020 Morud J, Hardege I, Liu H, Wu T, Basu S, Zhang Y, Schafer W. [Deorphanisation of novel biogenic amine-gated ion channels identifies a new serotonin receptor for learning](/publications/deorphanisation-novel-biogenic-amine-gated-ion-channels-identifies-new). bioRxiv . 2020;10(1101). Morud J, Hardege I, Liu H, Wu T, Basu S, Zhang Y, Schafer W. [Deorphanisation of novel biogenic amine-gated ion channels identifies a new serotonin receptor for learning](/publications/deorphanisation-novel-biogenic-amine-gated-ion-channels-identifies-new). bioRxiv . 2020;10(1101). - add\_circle\_outline do\_not\_disturb\_on Abstract - [ descriptionPublisher's Version](https://www.biorxiv.org/content/10.1101/2020.09.17.301382v1) Pentameric ligand-gated ion channels (LGCs) play conserved, critical roles in fast synaptic transmission, and changes in LGC expression and localisation are thought to underlie many forms of learning and memory. The C. elegans genome encodes a large... - [ descriptionPublisher's Version](https://www.biorxiv.org/content/10.1101/2020.09.17.301382v1) - Previous page chevron\_left - [1](?page=0 "Current page") - [2](?page=1 "Go to page 2") - [3](?page=2 "Go to page 3") - [ Last page 4 ](?page=3 "Go to last page") - [ Next page chevron\_right ](?page=1 "Go to next page")